[Term] id: PR:000021736 name: transcription intermediary factor 1-beta, initiator methionine removed form def: "A transcription intermediary factor 1-beta that has had the initiator methionine removed." [PRO:DNx] comment: Category=modification. synonym: "TRIM28/InitMet-" EXACT PRO-short-label [PRO:DNx] intersection_of: PR:000016652 ! transcription intermediary factor 1-beta intersection_of: lacks_part PR:000021937 ! initiator methionine [Term] id: PR:O08629 name: transcription intermediary factor 1-beta (rat) def: "A transcription intermediary factor 1-beta that is encoded in the genome of rat." [OMA:O08629, PRO:DNx] comment: Category=organism-gene. synonym: "Kap1" RELATED Gene-based [UniProtKB:O08629] synonym: "Tif1b" RELATED Gene-based [UniProtKB:O08629] synonym: "Trim28" RELATED Gene-based [UniProtKB:O08629] synonym: "rTRIM28" EXACT PRO-short-label [PRO:DNx] synonym: "TIF1-beta (rat)" EXACT [UniProtKB:O08629] synonym: "KRAB-associated protein 1 (rat)" EXACT [UniProtKB:O08629] synonym: "nuclear corepressor KAP-1 (rat)" EXACT [UniProtKB:O08629] synonym: "E3 SUMO-protein ligase TRIM28 (rat)" EXACT [UniProtKB:O08629] synonym: "tripartite motif-containing protein 28 (rat)" EXACT [UniProtKB:O08629] synonym: "RING-type E3 ubiquitin transferase TIF1-beta (rat)" EXACT [UniProtKB:O08629] xref: UniProtKB:O08629 intersection_of: only_in_taxon NCBITaxon:10116 ! Rattus norvegicus intersection_of: PR:000016652 ! transcription intermediary factor 1-beta relationship: has_gene_template RGD:620289 ! Trim28 (rat) [Term] id: PR:Q62318-1 name: transcription intermediary factor 1-beta isoform m1 (mouse) def: "A transcription intermediary factor 1-beta (mouse) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q62318-1." [PRO:DNx, UniProtKB:Q62318] comment: Category=organism-sequence. synonym: "mTRIM28/iso:m1" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:Q62318-1 is_a: PR:Q62318 ! transcription intermediary factor 1-beta (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:Q13263-1 name: transcription intermediary factor 1-beta isoform h1 (human) def: "A transcription intermediary factor 1-beta (human) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q13263-1." [PRO:DNx, UniProtKB:Q13263] comment: Category=organism-sequence. synonym: "hTRIM28/iso:h1" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:Q13263-1 is_a: PR:Q13263 ! transcription intermediary factor 1-beta (human) relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q13263-2 name: transcription intermediary factor 1-beta isoform h2 (human) def: "A transcription intermediary factor 1-beta (human) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q13263-2." [PRO:DNx, UniProtKB:Q13263] comment: Category=organism-sequence. synonym: "hTRIM28/iso:h2" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:Q13263-2 is_a: PR:Q13263 ! transcription intermediary factor 1-beta (human) relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:000049542 name: transcription intermediary factor 1-beta, initiator methionine removed form (human) def: "A transcription intermediary factor 1-beta (human) that has had the initiator methionine removed. UniProtKB:Q13263, 2-835." [PRO:DNx, Reactome:R-HSA-974998] comment: Category=organism-modification. synonym: "PRO_0000056392" EXACT PRO-proteoform-ftid [PRO:DNx] synonym: "hTRIM28/InitMet-" EXACT PRO-short-label [PRO:DNx] synonym: "UniProtKB:Q13263, 2-835" EXACT PRO-proteoform-std [PRO:DNx] xref: Reactome:R-HSA-974998 "PR:000049542 located_in GO:0005654" intersection_of: lacks_part PR:000021937 ! initiator methionine intersection_of: PR:Q13263 ! transcription intermediary factor 1-beta (human) relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: PR:Q62318-2 name: transcription intermediary factor 1-beta isoform m2 (mouse) def: "A transcription intermediary factor 1-beta (mouse) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q62318-2." [PRO:DNx, UniProtKB:Q62318] comment: Category=organism-sequence. synonym: "mTRIM28/iso:m2" EXACT PRO-short-label [PRO:DNx] xref: UniProtKB:Q62318-2 is_a: PR:Q62318 ! transcription intermediary factor 1-beta (mouse) relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus [Term] id: PR:000016652 name: transcription intermediary factor 1-beta def: "A tripartite motif-containing protein that is a translation product of the human TRIM28 gene or a 1:1 ortholog thereof." [PRO:DNx] comment: Category=gene. synonym: "KAP1" RELATED Gene-based [] synonym: "KAP-1" EXACT [] synonym: "Krip1" RELATED Gene-based [] synonym: "RNF96" RELATED Gene-based [] synonym: "TIF1B" RELATED Gene-based [] synonym: "KRIP-1" EXACT [] synonym: "TRIM28" EXACT PRO-short-label [PRO:DNx] synonym: "TIF1-beta" EXACT [] synonym: "RING finger protein 96" EXACT [] synonym: "KRAB-associated protein 1" EXACT [] synonym: "nuclear corepressor KAP-1" EXACT [] synonym: "KRAB-A-interacting protein" EXACT [] synonym: "KRAB-interacting protein 1" EXACT [] synonym: "E3 SUMO-protein ligase TRIM28" EXACT [] synonym: "tripartite motif-containing protein 28" EXACT [] synonym: "RING-type E3 ubiquitin transferase TIF1-beta" EXACT [] xref: IUPHARobj:2253 is_a: PR:000044733 ! tripartite motif-containing protein [Term] id: PR:Q62318 name: transcription intermediary factor 1-beta (mouse) def: "A transcription intermediary factor 1-beta that is encoded in the genome of mouse." [OMA:Q62318, PRO:DNx] comment: Category=organism-gene. synonym: "Kap1" RELATED Gene-based [UniProtKB:Q62318] synonym: "Krip1" RELATED Gene-based [UniProtKB:Q62318] synonym: "Tif1b" RELATED Gene-based [UniProtKB:Q62318] synonym: "Trim28" RELATED Gene-based [UniProtKB:Q62318] synonym: "mTRIM28" EXACT PRO-short-label [PRO:DNx] synonym: "KRIP-1 (mouse)" EXACT [UniProtKB:Q62318] synonym: "TIF1-beta (mouse)" EXACT [UniProtKB:Q62318] synonym: "KRAB-A-interacting protein (mouse)" EXACT [UniProtKB:Q62318] synonym: "E3 SUMO-protein ligase TRIM28 (mouse)" EXACT [UniProtKB:Q62318] synonym: "tripartite motif-containing protein 28 (mouse)" EXACT [UniProtKB:Q62318] synonym: "RING-type E3 ubiquitin transferase TIF1-beta (mouse)" EXACT [UniProtKB:Q62318] xref: UniProtKB:Q62318 intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus intersection_of: PR:000016652 ! transcription intermediary factor 1-beta relationship: has_gene_template MGI:109274 ! Trim28 (mouse) [Term] id: PR:Q13263 name: transcription intermediary factor 1-beta (human) def: "A transcription intermediary factor 1-beta that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q13263] comment: Category=organism-gene. synonym: "KAP1" RELATED Gene-based [UniProtKB:Q13263] synonym: "RNF96" RELATED Gene-based [UniProtKB:Q13263] synonym: "TIF1B" RELATED Gene-based [UniProtKB:Q13263] synonym: "TRIM28" RELATED Gene-based [UniProtKB:Q13263] synonym: "hTRIM28" EXACT PRO-short-label [PRO:DNx] synonym: "KAP-1 (human)" EXACT [UniProtKB:Q13263] synonym: "KRIP-1 (human)" EXACT [UniProtKB:Q13263] synonym: "TIF1-beta (human)" EXACT [UniProtKB:Q13263] synonym: "RING finger protein 96 (human)" EXACT [UniProtKB:Q13263] synonym: "KRAB-associated protein 1 (human)" EXACT [UniProtKB:Q13263] synonym: "nuclear corepressor KAP-1 (human)" EXACT [UniProtKB:Q13263] synonym: "KRAB-interacting protein 1 (human)" EXACT [UniProtKB:Q13263] synonym: "E3 SUMO-protein ligase TRIM28 (human)" EXACT [UniProtKB:Q13263] synonym: "tripartite motif-containing protein 28 (human)" EXACT [UniProtKB:Q13263] synonym: "RING-type E3 ubiquitin transferase TIF1-beta (human)" EXACT [UniProtKB:Q13263] xref: UniProtKB:Q13263 intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens intersection_of: PR:000016652 ! transcription intermediary factor 1-beta relationship: has_gene_template HGNC:16384 ! TRIM28 (human) [Term] id: PR:000045905 name: transcription intermediary factor 1-beta phosphorylated 1 (human) def: "A transcription intermediary factor 1-beta (human) that has been phosphorylated on the residue at the position equivalent to Ser-824 of the amino acid sequence represented by UniProtKB:Q13263-1. Example: UniProtKB:Q13263-1, Ser-824, MOD:00046." [PMID:16862143, PMID:20424263, iPTMnet:Q13263] comment: Category=organism-modification. Evidence=(ECO:0000006, based on PMID:16862143, PMID:20424263). Status=unreviewed. synonym: "hTRIM28/Phos:1" EXACT PRO-short-label [PRO:DNx] synonym: "UniProtKB:Q13263-1, Ser-824, MOD:00046" NARROW PRO-proteoform-std [PRO:DNx] is_a: PR:Q13263 ! transcription intermediary factor 1-beta (human) relationship: has_part MOD:00046 ! O-phospho-L-serine relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens