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Protein Ontology report - growth/differentiation factor
PR:000000098 - http://purl.obolibrary.org/obo/PR_000000098
 
  Protein Forms  Annotations      
Ontology Information Show OBO stanza
  PRO ID
PR:000000098   
  PRO namegrowth/differentiation factor 
  Definition"A TGF-beta-like cystine-knot cytokine that is closely related to the BMP family. These are produced as dimeric precursors and undergo post-translational processing for activation, requiring cleavage to release the bioactive C-terminal peptide. GDFs act as signaling molecules during embryonic tendon/ligament formation." [PRO:CNA] 
  PRO Categoryfamily 
  ParentPR:000000008 TGF-beta-like cystine-knot cytokine
  Terms by PRO Category
Organism-Independent Organism-Specific
         Category          Number of Terms          Category          Number of Terms
         Family1                                                  Organism-Family 0                                        
         Gene2                                                  Organism-Gene 5                                        
         Sequence3                                                  Organism-Sequence 9                                        
         Modification6                                                  Organism-Modification 3                                        
  Term Hierarchy
  Visualization
DAG: OLS:
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Protein Forms Switch to Compact View   

Category  

PRO ID

Name

Short Name

Definition

Ann. Has Annotation?

comp. In Complex?
family



PR:000000098

growth/differentiation factor

FST/iso:2


"A TGF-beta-like cystine-knot cytokine that is closely related to the BMP family. These are produced as dimeric precursors and undergo post-translational processing for activation, requiring cleavage to release the bioactive C-terminal peptide. GDFs act as signaling molecules during embryonic tendon/ligament formation." [PRO:CNA]


gene



PR:000000281

growth/differentiation factor 5

GDF5


"A growth/differentiation factor that is a translation product of the human GDF5 gene or a 1:1 ortholog thereof." [PRO:CNA]

Yes

organism-gene



PR:P43026

growth/differentiation factor 5 (human)

hGDF5


"A growth/differentiation factor 5 that is encoded in the genome of human." [PRO:CNA, UniProtKB:P43026]


organism-sequence



PR:000000437

growth/differentiation factor 5 sequence variant C400Y (human)

hGDF5/var:C400Y


"A growth/differentiation factor 5 (human) that has a Tyr residue at the position equivalent to Cys-400 of the amino acid sequence represented by UniProtKB:P43026. UniProtKB:P43026, Cys-400, CHEBI:46858." [PMID:9288098, PRO:CNA, PRO:DAN]

Yes

organism-sequence



PR:000000438

growth/differentiation factor 5 sequence variant R438L (human)

hGDF5/var:R438L


"A growth/differentiation factor 5 (human) that has a Leu residue at the position equivalent to Arg-438 of the amino acid sequence represented by UniProtKB:P43026. UniProtKB:P43026, Arg-438, CHEBI:30006." [PMID:16532400, PRO:CNA, PRO:DAN]

Yes

organism-sequence



PR:000000439

growth/differentiation factor 5 sequence variant L441P (human)

hGDF5/var:L441P


"A growth/differentiation factor 5 (human) that has a Pro residue at the position equivalent to Leu-441 of the amino acid sequence represented by UniProtKB:P43026. UniProtKB:P43026, Leu-441, CHEBI:50342." [PMID:12121354, PMID:16127465, PRO:CNA, PRO:DAN]

Yes

organism-sequence



PR:P43026-1

growth/differentiation factor 5 isoform 1 (human)

hGDF5/iso:1


"A growth/differentiation factor 5 isoform 1 that is encoded in the genome of human." [PRO:CNA]

Yes

organism-modification



PR:000036543

growth/differentiation factor 5 isoform 1 cleaved 1 (human)

hGDF5/iso:1/Clv:1


"A growth/differentiation factor 5 isoform 1 cleaved 1 in human. UniProtKB:P43026-1, 382-501." [PMID:15752764, PMID:15890363, PMID:16532400, PMID:8589725, PMID:8962721, PMID:9288098, PRO:CNA]

Yes

organism-modification



PR:000047523

growth/differentiation factor 5, signal peptide removed form (human)

hGDF5/SigPep-


"A growth/differentiation factor 5 (human) that has had the signal peptide removed. UniProtKB:P43026, 28-501." [PRO:DNx, Reactome:R-HSA-2396129]


organism-modification



PR:000036543

growth/differentiation factor 5 isoform 1 cleaved 1 (human)

hGDF5/iso:1/Clv:1


"A growth/differentiation factor 5 isoform 1 cleaved 1 in human. UniProtKB:P43026-1, 382-501." [PMID:15752764, PMID:15890363, PMID:16532400, PMID:8589725, PMID:8962721, PMID:9288098, PRO:CNA]

Yes

organism-gene



PR:P43027

growth/differentiation factor 5 (mouse)

mGDF5


"A growth/differentiation factor 5 that is encoded in the genome of mouse." [OMA:P43027, PRO:DNx]


organism-sequence



PR:000000441

growth/differentiation factor 5 sequence variant 5 (mouse)

mGDF5/var:5


"A growth/differentiation factor 5 (mouse) that has a frameshift at the position equivalent to residue 376 of the amino acid sequence represented by UniProtKB:P43027." [PMID:8145850, PRO:CNA, PRO:DAN]

Yes

organism-sequence



PR:000036417

growth/differentiation factor 5 sequence variant V186* (mouse)

mGDF5/var:V186*


"A growth/differentiation factor 5 (mouse) that has a polypeptide truncation after the position equivalent to residue 185 of the amino acid sequence represented by UniProtKB:P43027. UniProtKB:P43027, 1-185." [PMID:8145850, PRO:CNA]

Yes

organism-sequence



PR:P43027-1

growth/differentiation factor 5 isoform 1 (mouse)

mGDF5/iso:1


"A growth/differentiation factor 5 isoform 1 that is encoded in the genome of mouse." [PRO:CNA]


organism-gene



PR:Q5KSY1

growth and differentiation factor-5 (rat)

rGDF5


"A growth/differentiation factor 5 that is encoded in the genome of rat." [PANTHER:PTHR11848:SF44, PRO:DNx]


sequence



PR:000000436

growth/differentiation factor 5 isoform 1

GDF5/iso:1


"A growth/differentiation factor 5 that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:P43026-1 or a 1:1 ortholog thereof." [PRO:CNA, PRO:DAN]


organism-sequence



PR:P43026-1

growth/differentiation factor 5 isoform 1 (human)

hGDF5/iso:1


"A growth/differentiation factor 5 isoform 1 that is encoded in the genome of human." [PRO:CNA]

Yes

organism-modification



PR:000036543

growth/differentiation factor 5 isoform 1 cleaved 1 (human)

hGDF5/iso:1/Clv:1


"A growth/differentiation factor 5 isoform 1 cleaved 1 in human. UniProtKB:P43026-1, 382-501." [PMID:15752764, PMID:15890363, PMID:16532400, PMID:8589725, PMID:8962721, PMID:9288098, PRO:CNA]

Yes

organism-sequence



PR:P43027-1

growth/differentiation factor 5 isoform 1 (mouse)

mGDF5/iso:1


"A growth/differentiation factor 5 isoform 1 that is encoded in the genome of mouse." [PRO:CNA]


modification



PR:000021914

growth/differentiation factor 5 isoform 1, signal peptide removed form

GDF5/iso:1/SigPep-


"A growth/differentiation factor 5 isoform 1 that has had the signal peptide removed." [PRO:DNx]


modification



PR:000000640

growth/differentiation factor 5 isoform 1 cleaved 1

GDF5/iso:1/Clv:1


"A growth/differentiation factor 5 isoform 1, signal peptide removed form that has been processed by subsequent removal of the propeptide, yielding the mature protein. The functional unit is a dimer." [PMID:8962721, PRO:CNA]


organism-modification



PR:000036543

growth/differentiation factor 5 isoform 1 cleaved 1 (human)

hGDF5/iso:1/Clv:1


"A growth/differentiation factor 5 isoform 1 cleaved 1 in human. UniProtKB:P43026-1, 382-501." [PMID:15752764, PMID:15890363, PMID:16532400, PMID:8589725, PMID:8962721, PMID:9288098, PRO:CNA]

Yes

modification



PR:000021929

growth/differentiation factor 5 proteolytic cleavage product

GDF5/ClvPrd


"A growth/differentiation factor 5 that has been processed by proteolytic cleavage." [PRO:DAN]


gene



PR:000000282

growth/differentiation factor 7

GDF7


"A growth/differentiation factor that is a translation product of the human GDF7 gene or a 1:1 ortholog thereof." [PRO:CNA]

Yes

organism-gene



PR:P43029

growth/differentiation factor 7 (mouse)

mGDF7


"A growth/differentiation factor 7 that is encoded in the genome of mouse." [OMA:P43029, PRO:DNx]

Yes

organism-sequence



PR:P43029-1

growth/differentiation factor 7 isoform 1 (mouse)

mGDF7/iso:1


"A growth/differentiation factor 7 isoform 1 that is encoded in the genome of mouse." [PRO:CNA]


organism-modification



PR:000036544

growth/differentiation factor 7 isoform 1 cleaved 1 (mouse)

mGDF7/iso:1/Clv:1


"A growth/differentiation factor 7 isoform 1 cleaved 1 in mouse. UniProtKB:P43029-1, 316-461." [PMID:12741987, PRO:CNA]

Yes

organism-sequence



PR:P43029-2

growth/differentiation factor 7 isoform 2 (mouse)

mGDF7/iso:2


"A growth/differentiation factor 7 isoform 2 that is encoded in the genome of mouse." [PRO:CNA]


organism-gene



PR:Q7Z4P5

growth/differentiation factor 7 (human)

hGDF7


"A growth/differentiation factor 7 that is encoded in the genome of human." [PRO:CNA, UniProtKB:Q7Z4P5]


sequence



PR:000000442

growth/differentiation factor 7 isoform 1

GDF7/iso:1


"A growth/differentiation factor 7 that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:P43029-1 or a 1:1 ortholog thereof." [PRO:CNA, PRO:DAN]


organism-sequence



PR:P43029-1

growth/differentiation factor 7 isoform 1 (mouse)

mGDF7/iso:1


"A growth/differentiation factor 7 isoform 1 that is encoded in the genome of mouse." [PRO:CNA]


organism-modification



PR:000036544

growth/differentiation factor 7 isoform 1 cleaved 1 (mouse)

mGDF7/iso:1/Clv:1


"A growth/differentiation factor 7 isoform 1 cleaved 1 in mouse. UniProtKB:P43029-1, 316-461." [PMID:12741987, PRO:CNA]

Yes

modification



PR:000021915

growth/differentiation factor 7 isoform 1, signal peptide removed form

GDF7/iso:1/SigPep-


"A growth/differentiation factor 7 isoform 1 that has had the signal peptide removed." [PRO:DNx]


modification



PR:000000641

growth/differentiation factor 7 isoform 1 cleaved 1

GDF7/iso:1/Clv:1


"A growth/differentiation factor 7 isoform 1, signal peptide removed form that has been processed by subsequent removal of the propeptide, yielding the mature protein." [PRO:CNA]


organism-modification



PR:000036544

growth/differentiation factor 7 isoform 1 cleaved 1 (mouse)

mGDF7/iso:1/Clv:1


"A growth/differentiation factor 7 isoform 1 cleaved 1 in mouse. UniProtKB:P43029-1, 316-461." [PMID:12741987, PRO:CNA]

Yes

sequence



PR:000000443

growth/differentiation factor 7 isoform 2

GDF7/iso:2


"A growth/differentiation factor 7 that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:P43029-2 or a 1:1 ortholog thereof." [PRO:CNA, PRO:DAN]


organism-sequence



PR:P43029-2

growth/differentiation factor 7 isoform 2 (mouse)

mGDF7/iso:2


"A growth/differentiation factor 7 isoform 2 that is encoded in the genome of mouse." [PRO:CNA]


modification



PR:000021930

growth/differentiation factor 7 proteolytic cleavage product

GDF7/ClvPrd


"A growth/differentiation factor 7 that has been processed by proteolytic cleavage." [PRO:DAN]


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Functional Annotation (PRO-centric view) Switch to GO Centric View   
PRO Term GO Annotation Evidence
PR:000000281 GDF5 acts_upstream_of_or_withinGO:0030326 embryonic limb morphogenesis PANTHER:PTHR11848
PR:000000282 GDF7 acts_upstream_of_or_withinGO:0007154 cell communication PANTHER:PTHR11848
PR:000000437 hGDF5/var:C400Y
UniProtKB:P43026, Cys-400, CHEBI:46858
associated_with_disease_progressionDO:0080052 acromesomelic dysplasia, Grebe type UniProtKB_VAR:VAR_017407
enablesGO:0005515 protein binding with PR:000000164 BMP-2 PMID:9288098
NOT GO:0008083 growth factor activity PMID:9288098
located_inGO:0005622 intracellular anatomical structure PMID:9288098
PR:000000438 hGDF5/var:R438L
UniProtKB:P43026, Arg-438, CHEBI:30006
associated_with_disease_progressionDO:0050794 multiple synostoses syndrome PMID:16532400
located_inGO:0005615 extracellular space PMID:16532400
PR:000000439 hGDF5/var:L441P
UniProtKB:P43026, Leu-441, CHEBI:50342
associated_with_disease_progressionDO:0050790 fibular hypoplasia and complex brachydactyly UniProtKB_VAR:VAR_017408
PR:000000441 mGDF5/var:5 associated_with_disease_progressionMP:0006279 abnormal limb development PMID:8145850
PR:000036417 mGDF5/var:V186*
UniProtKB:P43027, 1-185
associated_with_disease_progressionMP:0006279 abnormal limb development PMID:8145850
located_inSO:0001587 stop_gained PMID:8145850
PR:000036543 hGDF5/iso:1/Clv:1
UniProtKB:P43026-1, 382-501
enablesGO:0005102 signaling receptor binding PMID:15752764; PMID:15890363
GO:0005515 protein binding PMID:9288098
GO:0008083 growth factor activity PMID:8589725
GO:0042803 protein homodimerization activity PMID:15752764; PMID:8962721
located_inGO:0005615 extracellular space PMID:16532400
PR:000036544 mGDF7/iso:1/Clv:1
UniProtKB:P43029-1, 316-461
acts_upstream_of_or_withinGO:0007411 axon guidance PMID:12741987
enablesGO:0005515 protein binding with PR:000036516 mBMP7/iso:1/mature PMID:12741987
located_inGO:0005576 extracellular region PMID:12741987
PR:P43026-1 hGDF5/iso:1 acts_upstream_of_or_withinGO:0007179 transforming growth factor beta receptor signaling pathway PMID:7961761
GO:0007267 cell-cell signaling PMID:8589725
PR:P43029 mGDF7 acts_upstream_of_or_withinGO:0045165 cell fate commitment PMID:15883363