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Protein Ontology report - cyclic nucleotide-gated channel beta subunit
PR:000000674 - http://purl.obolibrary.org/obo/PR_000000674
 
  Protein Forms  Annotations      
Ontology Information Show OBO stanza
  PRO ID
PR:000000674   
  PRO namecyclic nucleotide-gated channel beta subunit 
  Definition"A cyclic nucleotide-regulated channel protein that is the modulatory subunit of the cyclic nucleotide-gated channel (CNG channel). It consists of amino- and carboxyl-terminal intracellular domains separated by a domain (common with other ion channels) containing six transmembrane helices (S1-S6) in which the last two helices (S5 and S6) flank a loop, called the pore loop, which determines ion selectivity. The carboxy-terminal region contains the Cyclic nucleotide-binding domain (Pfam:PF00027) (CNBD) and a region connecting the CNBD to the S6 segment (C-linker), which is important for modulation by transition metals. CNG beta subunits combine with the alpha subunits to form the cyclic nucleotide-gated ion channels, which mediate sensory transduction in photoreceptors and olfactory sensory neurons. These channels are likely composed of four subunits around a centrally located ion-permeable pore that opens in response to the direct binding of intracellular cyclic nucleotides. CNG channels are non-selective cation channels. They are not gated by membrane voltage although their structure includes the transmembrane S4 motif known to function as the membrane voltage sensor in all voltage-gated ion channels, but it has been shown to be important for proper folding and processing. Alpha and beta subunits of the CNG channel are very similar, however the beta subunits are not able to form functional channels by themselves." [PRO:CNA] 
  PRO Categoryfamily 
  ParentPR:000044648 cyclic nucleotide-regulated channel protein
  Terms by PRO Category
Organism-Independent Organism-Specific
         Category          Number of Terms          Category          Number of Terms
         Family1                                                  Organism-Family 0                                        
         Gene2                                                  Organism-Gene 4                                        
         Sequence3                                                  Organism-Sequence 8                                        
         Modification0                                                  Organism-Modification 3                                        
  Term Hierarchy
  Visualization
DAG: OLS:
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Related Cross References

  Db identifiers
PIRSF:PIRSF038515
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Protein Forms Switch to Compact View   

Category  

PRO ID

Name

Short Name

Definition

Ann. Has Annotation?

comp. In Complex?
family



PR:000000674

cyclic nucleotide-gated channel beta subunit

CATSPERB


"A cyclic nucleotide-regulated channel protein that is the modulatory subunit of the cyclic nucleotide-gated channel (CNG channel). It consists of amino- and carboxyl-terminal intracellular domains separated by a domain (common with other ion channels) containing six transmembrane helices (S1-S6) in which the last two helices (S5 and S6) flank a loop, called the pore loop, which determines ion selectivity. The carboxy-terminal region contains the Cyclic nucleotide-binding domain (Pfam:PF00027) (CNBD) and a region connecting the CNBD to the S6 segment (C-linker), which is important for modulation by transition metals. CNG beta subunits combine with the alpha subunits to form the cyclic nucleotide-gated ion channels, which mediate sensory transduction in photoreceptors and olfactory sensory neurons. These channels are likely composed of four subunits around a centrally located ion-permeable pore that opens in response to the direct binding of intracellular cyclic nucleotides. CNG channels are non-selective cation channels. They are not gated by membrane voltage although their structure includes the transmembrane S4 motif known to function as the membrane voltage sensor in all voltage-gated ion channels, but it has been shown to be important for proper folding and processing. Alpha and beta subunits of the CNG channel are very similar, however the beta subunits are not able to form functional channels by themselves." [PRO:CNA]


gene



PR:000000697

cyclic nucleotide-gated cation channel beta-3

CNGB3


"A cyclic nucleotide-gated channel beta subunit that is a translation product of the human CNGB3 gene or a 1:1 ortholog thereof. Many members of this class are subunits of the cone cyclic nucleotide-gated cation channel, which generates the light-evoked electrical responses of cone photoreceptors." [PRO:CNA]


organism-gene



PR:Q9JJZ9

cyclic nucleotide-gated cation channel beta-3 (mouse)

mCNGB3


"A cyclic nucleotide-gated cation channel beta-3 that is encoded in the genome of mouse." [OMA:Q9JJZ9, PRO:DNx]


organism-sequence



PR:Q9JJZ9-1

cyclic nucleotide-gated cation channel beta-3 isoform 1 (mouse)

mCNGB3/iso:1


"A cyclic nucleotide-gated cation channel beta-3 isoform 1 that is encoded in the genome of mouse." [PRO:CNA]

Yes

organism-gene



PR:Q9NQW8

cyclic nucleotide-gated cation channel beta-3 (human)

hCNGB3


"A cyclic nucleotide-gated cation channel beta-3 that is encoded in the genome of human." [PRO:CNA, UniProtKB:Q9NQW8]


organism-sequence



PR:000000752

cyclic nucleotide-gated cation channel beta-3 sequence variant S435F (human)

hCNGB3/var:S435F


"A cyclic nucleotide-gated cation channel beta-3 (human) that has a Phe residue at the position equivalent to Ser-435 of the amino acid sequence represented by UniProtKB:Q9NQW8-1. Example: UniProtKB:Q9NQW8-1, Ser-435, CHEBI:29997." [PMID:10888875, PMID:10958649, PRO:CNA, PRO:DAN]

Yes

organism-sequence



PR:Q9NQW8-1

cyclic nucleotide-gated cation channel beta-3 isoform 1 (human)

hCNGB3/iso:1


"A cyclic nucleotide-gated cation channel beta-3 isoform 3 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9NQW8]


organism-sequence



PR:Q9NQW8-2

cyclic nucleotide-gated cation channel beta-3 isoform 2 (human)

hCNGB3/iso:2


"A cyclic nucleotide-gated cation channel beta-3 isoform 2 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9NQW8]


sequence



PR:000000749

cyclic nucleotide-gated cation channel beta-3 isoform 1

CNGB3/iso:1


"A cyclic nucleotide-gated cation channel beta-3 that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q9JJZ9-1 or a 1:1 ortholog thereof." [PRO:CNA, PRO:DAN]


organism-sequence



PR:Q9JJZ9-1

cyclic nucleotide-gated cation channel beta-3 isoform 1 (mouse)

mCNGB3/iso:1


"A cyclic nucleotide-gated cation channel beta-3 isoform 1 that is encoded in the genome of mouse." [PRO:CNA]

Yes

sequence



PR:000000750

cyclic nucleotide-gated cation channel beta-3 isoform 2

CNGB3/iso:2


"A cyclic nucleotide-gated cation channel beta-3 that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q9NQW8-2 or a 1:1 ortholog thereof." [PMID:10888875, PRO:CNA, PRO:DAN]


organism-sequence



PR:Q9NQW8-2

cyclic nucleotide-gated cation channel beta-3 isoform 2 (human)

hCNGB3/iso:2


"A cyclic nucleotide-gated cation channel beta-3 isoform 2 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9NQW8]


sequence



PR:000000751

cyclic nucleotide-gated cation channel beta-3 isoform 3

CNGB3/iso:3


"A cyclic nucleotide-gated cation channel beta-3 that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q9NQW8-1 or a 1:1 ortholog thereof." [PMID:10958649, PRO:CNA, PRO:DAN]


organism-sequence



PR:Q9NQW8-1

cyclic nucleotide-gated cation channel beta-3 isoform 1 (human)

hCNGB3/iso:1


"A cyclic nucleotide-gated cation channel beta-3 isoform 3 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q9NQW8]


gene



PR:000005632

cyclic nucleotide-gated cation channel beta-1

CNGB1


"A cyclic nucleotide-gated channel beta subunit that is a translation product of the human CNGB1 gene or a 1:1 ortholog thereof." [PRO:DNx]


organism-gene



PR:Q14028

cyclic nucleotide-gated cation channel beta-1 (human)

hCNGB1


"A cyclic nucleotide-gated cation channel beta-1 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q14028]


organism-sequence



PR:Q14028-1

cyclic nucleotide-gated cation channel beta-1 isoform hRCNC2B (human)

hCNGB1/iso:hRCNC2B


"A cyclic nucleotide-gated cation channel beta-1 (human) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q14028-1." [PRO:DNx, UniProtKB:Q14028]


organism-sequence



PR:Q14028-2

cyclic nucleotide-gated cation channel beta-1 isoform hRCNC2A (human)

hCNGB1/iso:hRCNC2A


"A cyclic nucleotide-gated cation channel beta-1 (human) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q14028-2." [PRO:DNx, UniProtKB:Q14028]


organism-sequence



PR:Q14028-3

cyclic nucleotide-gated cation channel beta-1 isoform hGARP2 (human)

hCNGB1/iso:hGARP2


"A cyclic nucleotide-gated cation channel beta-1 (human) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q14028-3." [PRO:DNx, UniProtKB:Q14028]


organism-sequence



PR:Q14028-4

cyclic nucleotide-gated cation channel beta-1 isoform h4 (human)

hCNGB1/iso:h4


"A cyclic nucleotide-gated cation channel beta-1 (human) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q14028-4." [PRO:DNx, UniProtKB:Q14028]


organism-modification



PR:000065272

cyclic nucleotide-gated cation channel beta-1 deaminated 1 (human)

hCNGB1/Deam:1


"A cyclic nucleotide-gated cation channel beta-1 (human) that has been deaminated on the residue at the position equivalent to Gln-1003 of the amino acid sequence represented by UniProtKB:Q14028-1. Example: UniProtKB:Q14028-1, Gln-1003, MOD:00685." [IEDB_epitope:1855197, PRO:DNx]


organism-modification



PR:000068737

cyclic nucleotide-gated cation channel beta-1 phosphorylated 1 (human)

hCNGB1/Phos:1


"A cyclic nucleotide-gated cation channel beta-1 (human) that has been phosphorylated on the residue at the position equivalent to Thr-845 of the amino acid sequence represented by UniProtKB:Q14028-1. Example: UniProtKB:Q14028-1, Thr-845, MOD:00047." [IEDB_epitope:2145906, PRO:DNx]


organism-modification



PR:000071055

cyclic nucleotide-gated cation channel beta-1 phosphorylated 2 (human)

hCNGB1/Phos:2


"A cyclic nucleotide-gated cation channel beta-1 (human) that has been phosphorylated on the residue at the position equivalent to Ser-735 of the amino acid sequence represented by UniProtKB:Q14028-1. Example: UniProtKB:Q14028-1, Ser-735, MOD:00046." [IEDB_epitope:2147205, PRO:DNx]


organism-gene



PR:Q39128

potassium channel KAT1 (Arabidopsis thaliana)

At-CNGB1


"A cyclic nucleotide-gated cation channel beta-1 that is encoded in the genome of Arabidopsis thaliana." [PRO:DNx]


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Functional Annotation (GO-centric view) Switch to PRO Centric View     

Disease Associated GO Term

Protein Forms & Complexes

Evidence
DO:13911 achromatopsiaPR:000000752 hCNGB3/var:S435F PMID:10888875; PMID:10958649

Molecular Function GO Term

Protein Forms & Complexes

Evidence
GO:0005223 intracellularly cGMP-activated cation channel activityPR:Q9JJZ9-1 mCNGB3/iso:1 PMID:10662822
GO:0005515 protein bindingPR:Q9JJZ9-1 mCNGB3/iso:1 PMID:10662822

Cellular Location GO Term

Protein Forms & Complexes

Evidence
GO:0001750 photoreceptor outer segmentPR:Q9JJZ9-1 mCNGB3/iso:1 PMID:15634774
GO:0005886 plasma membranePR:Q9JJZ9-1 mCNGB3/iso:1 PMID:10662822