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Protein Ontology report - transcription factor RFX4
PR:000013926 - http://purl.obolibrary.org/obo/PR_000013926
 
  Protein Forms  Annotations      
Ontology Information Show OBO stanza
  PRO ID
PR:000013926   
  PRO nametranscription factor RFX4 
  Synonyms
PRO-Short-label: EXACT:RFX4
Other: EXACT:regulatory factor X 4 | testis development protein NYD-SP10
  Definition"A protein that is a translation product of the human RFX4 gene or a 1:1 ortholog thereof." [PRO:DNx] 
  PRO Categorygene 
  ParentPR:000000001 protein
  Terms by PRO Category
Organism-Independent Organism-Specific
         Category          Number of Terms          Category          Number of Terms
         Gene1                                                  Organism-Gene 3                                        
         Sequence2                                                  Organism-Sequence 8                                        
         Modification0                                                  Organism-Modification 0                                        
  Term Hierarchy
  Visualization
DAG: OLS:
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Protein Forms Switch to Compact View   

Category  

PRO ID

Name

Short Name

Definition

Ann. Has Annotation?

comp. In Complex?
gene



PR:000013926

transcription factor RFX4

RFX4


"A protein that is a translation product of the human RFX4 gene or a 1:1 ortholog thereof." [PRO:DNx]


organism-gene



PR:A2BGA0

transcription factor RFX4 (zebrafish)

z-RFX4


"A transcription factor RFX4 that is encoded in the genome of zebrafish." [PRO:DNx]


organism-gene



PR:Q33E94

transcription factor RFX4 (human)

hRFX4


"A transcription factor RFX4 that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q33E94]


organism-sequence



PR:Q33E94-1

transcription factor RFX4 isoform 1 (human)

hRFX4/iso:1


"A transcription factor RFX4 isoform 1 that is encoded in the genome of human." [PRO:DNx]


organism-sequence



PR:Q33E94-2

transcription factor RFX4 isoform h2 (human)

hRFX4/iso:h2


"A transcription factor RFX4 (human) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q33E94-2." [PRO:DNx, UniProtKB:Q33E94]


organism-sequence



PR:Q33E94-3

transcription factor RFX4 isoform 3 (human)

hRFX4/iso:3


"A transcription factor RFX4 isoform 3 that is encoded in the genome of human." [PRO:DNx]


organism-sequence



PR:Q33E94-4

transcription factor RFX4 isoform h4 (human)

hRFX4/iso:h4


"A transcription factor RFX4 (human) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q33E94-4." [PRO:DNx, UniProtKB:Q33E94]


organism-gene



PR:Q7TNK1

transcription factor RFX4 (mouse)

mRFX4


"A transcription factor RFX4 that is encoded in the genome of mouse." [OMA:Q7TNK1, PRO:DNx]


organism-sequence



PR:Q7TNK1-1

transcription factor RFX4 isoform 1 (mouse)

mRFX4/iso:1


"A transcription factor RFX4 isoform 1 that is encoded in the genome of mouse." [PRO:DNx]

Yes

organism-sequence



PR:Q7TNK1-2

transcription factor RFX4 isoform 2 (mouse)

mRFX4/iso:2


"A transcription factor RFX4 isoform 3 that is encoded in the genome of mouse." [PRO:DNx]


organism-sequence



PR:Q7TNK1-3

transcription factor RFX4 isoform m3 (mouse)

mRFX4/iso:m3


"A transcription factor RFX4 (mouse) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q7TNK1-3." [PRO:DNx, UniProtKB:Q7TNK1]


organism-sequence



PR:Q7TNK1-4

transcription factor RFX4 isoform m4 (mouse)

mRFX4/iso:m4


"A transcription factor RFX4 (mouse) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q7TNK1-4." [PRO:DNx, UniProtKB:Q7TNK1]


sequence



PR:000040781

transcription factor RFX4 isoform 1

RFX4/iso:1


"A transcription factor RFX4 that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q33E94-1 or a 1:1 ortholog thereof." [PRO:DNx]


organism-sequence



PR:Q33E94-1

transcription factor RFX4 isoform 1 (human)

hRFX4/iso:1


"A transcription factor RFX4 isoform 1 that is encoded in the genome of human." [PRO:DNx]


organism-sequence



PR:Q7TNK1-1

transcription factor RFX4 isoform 1 (mouse)

mRFX4/iso:1


"A transcription factor RFX4 isoform 1 that is encoded in the genome of mouse." [PRO:DNx]

Yes

sequence



PR:000040782

transcription factor RFX4 isoform 3

RFX4/iso:3


"A transcription factor RFX4 that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q33E94-3 or a 1:1 ortholog thereof." [PRO:DNx]


organism-sequence



PR:Q33E94-3

transcription factor RFX4 isoform 3 (human)

hRFX4/iso:3


"A transcription factor RFX4 isoform 3 that is encoded in the genome of human." [PRO:DNx]


organism-sequence



PR:Q7TNK1-2

transcription factor RFX4 isoform 2 (mouse)

mRFX4/iso:2


"A transcription factor RFX4 isoform 3 that is encoded in the genome of mouse." [PRO:DNx]


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Functional Annotation (GO-centric view) Switch to PRO Centric View     

Biological Process GO Term

Protein Forms & Complexes

Evidence
GO:0021516 dorsal spinal cord developmentPR:Q7TNK1-1 mRFX4/iso:1 MGI_ref:2669568; PMID:12925582
GO:0021696 cerebellar cortex morphogenesisPR:Q7TNK1-1 mRFX4/iso:1 MGI_ref:2669568; PMID:12925582
GO:0030900 forebrain developmentPR:Q7TNK1-1 mRFX4/iso:1 MGI_ref:2669568; PMID:12925582
GO:0030901 midbrain developmentPR:Q7TNK1-1 mRFX4/iso:1 MGI_ref:2669568; PMID:12925582
GO:0045944 positive regulation of transcription by RNA polymerase IIPR:Q7TNK1-1 mRFX4/iso:1 MGI_ref:3701709; PMID:16893423

Molecular Function GO Term

Protein Forms & Complexes

Evidence
GO:0003682 chromatin bindingPR:Q7TNK1-1 mRFX4/iso:1 MGI_ref:3701709; PMID:16893423

Cellular Location GO Term

Protein Forms & Complexes

Evidence
GO:0005634 nucleusPR:Q7TNK1-1 mRFX4/iso:1 MGI_ref:3701709; PMID:16893423