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Protein Ontology report - transcription intermediary factor 1-beta
PR:000016652 - http://purl.obolibrary.org/obo/PR_000016652
 
  Protein Forms      
Ontology Information Show OBO stanza
  PRO ID
PR:000016652   
  PRO nametranscription intermediary factor 1-beta 
  Synonyms
PRO-Short-label: EXACT:TRIM28
Gene-based: RELATED:KAP1 | Krip1 | RNF96 | TIF1B
Other: EXACT:E3 SUMO-protein ligase TRIM28 | KAP-1 | KRAB-A-interacting protein | KRAB-associated protein 1 | KRAB-interacting protein 1 | KRIP-1 | nuclear corepressor KAP-1 | RING finger protein 96 | RING-type E3 ubiquitin transferase TIF1-beta | TIF1-beta | tripartite motif-containing protein 28
  Definition"A tripartite motif-containing protein that is a translation product of the human TRIM28 gene or a 1:1 ortholog thereof." [PRO:DNx] 
  PRO Categorygene 
  ParentPR:000044733 tripartite motif-containing protein
  Terms by PRO Category
Organism-Independent Organism-Specific
         Category          Number of Terms          Category          Number of Terms
         Gene1                                                  Organism-Gene 3                                        
         Sequence0                                                  Organism-Sequence 4                                        
         Modification1                                                  Organism-Modification 6                                        
  Term Hierarchy
  Visualization
DAG: OLS:
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Related Cross References

  Db identifiers
IUPHARobj:2253
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Protein Forms Switch to Compact View   

Category  
PRO ID
Name
Short Name
Definition
Ann. Has Annotation?

comp. In Complex?
gene


PR:000016652
transcription intermediary factor 1-beta
TRIM28
"A tripartite motif-containing protein that is a translation product of the human TRIM28 gene or a 1:1 ortholog thereof." [PRO:DNx]

organism-gene


PR:O08629
transcription intermediary factor 1-beta (rat)
rTRIM28
"A transcription intermediary factor 1-beta that is encoded in the genome of rat." [OMA:O08629, PRO:DNx]

organism-gene


PR:Q13263
transcription intermediary factor 1-beta (human)
hTRIM28
"A transcription intermediary factor 1-beta that is encoded in the genome of human." [PRO:DNx, UniProtKB:Q13263]

organism-sequence


PR:Q13263-1
transcription intermediary factor 1-beta isoform h1 (human)
hTRIM28/iso:h1
"A transcription intermediary factor 1-beta (human) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q13263-1." [PRO:DNx, UniProtKB:Q13263]

organism-sequence


PR:Q13263-2
transcription intermediary factor 1-beta isoform h2 (human)
hTRIM28/iso:h2
"A transcription intermediary factor 1-beta (human) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q13263-2." [PRO:DNx, UniProtKB:Q13263]

organism-modification


PR:000045905
transcription intermediary factor 1-beta phosphorylated 1 (human)
hTRIM28/Phos:1
"A transcription intermediary factor 1-beta (human) that has been phosphorylated on the residue at the position equivalent to Ser-824 of the amino acid sequence represented by UniProtKB:Q13263-1. Example: UniProtKB:Q13263-1, Ser-824, MOD:00046." [iPTMnet:Q13263, PMID:16862143, PMID:20424263]

organism-modification


PR:000049542
transcription intermediary factor 1-beta, initiator methionine removed form (human)
hTRIM28/InitMet-
"A transcription intermediary factor 1-beta (human) that has had the initiator methionine removed. UniProtKB:Q13263, 2-835." [PRO:DNx, Reactome:R-HSA-974998]

organism-modification


PR:000064642
transcription intermediary factor 1-beta, initiator methionine removed sumoylated 1 (human)
hTRIM28/InitMet-/Sumo:1
"A transcription intermediary factor 1-beta (human) that has had the initiator methionine removed and that has been sumoylated on the residues at the positions equivalent to Lys-554, Lys-575, Lys-676, Lys-750, Lys-779, and Lys-804 of the amino acid sequence represented by UniProtKB:Q13263-1. Example: UniProtKB:Q13263-1, 2-835, Lys-554/Lys-575/Lys-676/Lys-750/Lys-779/Lys-804, MOD:01149." [PRO:DNx, Reactome:R-HSA-3782600]

organism-modification


PR:000075352
transcription intermediary factor 1-beta methylated 1 (human)
hTRIM28/Me:1
"A transcription intermediary factor 1-beta (human) that has been methylated on the residue at the position equivalent to Cys-669 of the amino acid sequence represented by UniProtKB:Q13263-1. Example: UniProtKB:Q13263-1, Cys-669, MOD:00660." [IEDB_epitope:1049688, PRO:DNx]

organism-modification


PR:000080283
transcription intermediary factor 1-beta cysteinylated 1 (human)
hTRIM28/Cyst:1
"A transcription intermediary factor 1-beta (human) that has been cysteinylated on the residue at the position equivalent to Cys-117 of the amino acid sequence represented by UniProtKB:Q13263-1. Example: UniProtKB:Q13263-1, Cys-117, MOD:00765." [IEDB_epitope:1056138, PRO:DNx]

organism-modification


PR:000084956
transcription intermediary factor 1-beta cysteinylated 2 (human)
hTRIM28/Cyst:2
"A transcription intermediary factor 1-beta (human) that has been cysteinylated on the residue at the position equivalent to Cys-669 of the amino acid sequence represented by UniProtKB:Q13263-1. Example: UniProtKB:Q13263-1, Cys-669, MOD:00765." [IEDB_epitope:1049687, PRO:DNx]

organism-gene


PR:Q62318
transcription intermediary factor 1-beta (mouse)
mTRIM28
"A transcription intermediary factor 1-beta that is encoded in the genome of mouse." [OMA:Q62318, PRO:DNx]

organism-sequence


PR:Q62318-1
transcription intermediary factor 1-beta isoform m1 (mouse)
mTRIM28/iso:m1
"A transcription intermediary factor 1-beta (mouse) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q62318-1." [PRO:DNx, UniProtKB:Q62318]

organism-sequence


PR:Q62318-2
transcription intermediary factor 1-beta isoform m2 (mouse)
mTRIM28/iso:m2
"A transcription intermediary factor 1-beta (mouse) that is a translation product of some mRNA whose exon structure and start site selection renders it capable of giving rise to a protein with the amino acid sequence represented by UniProtKB:Q62318-2." [PRO:DNx, UniProtKB:Q62318]

modification


PR:000021736
transcription intermediary factor 1-beta, initiator methionine removed form
TRIM28/InitMet-
"A transcription intermediary factor 1-beta that has had the initiator methionine removed." [PRO:DNx]

organism-modification


PR:000049542
transcription intermediary factor 1-beta, initiator methionine removed form (human)
hTRIM28/InitMet-
"A transcription intermediary factor 1-beta (human) that has had the initiator methionine removed. UniProtKB:Q13263, 2-835." [PRO:DNx, Reactome:R-HSA-974998]