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Protein Ontology report - retinoic acid receptor alpha (mouse)
PR:P11416 - http://purl.obolibrary.org/obo/PR_P11416
 
  Protein Forms  Annotations      
Ontology Information Show OBO stanza / PAF / GPI
  PRO ID
PR:P11416   
  PRO nameretinoic acid receptor alpha (mouse) 
  Synonyms
PRO-Short-label: EXACT:mRARA
Gene-based: RELATED:Nr1b1 | Rara
Other: EXACT:nuclear receptor subfamily 1 group B member 1 (mouse) | RAR-alpha (mouse)
  Definition"A retinoic acid receptor alpha that is encoded in the genome of mouse." [OMA:P11416, PRO:DNx] 
  PRO Categoryorganism-gene 
  ParentPR:000013736 retinoic acid receptor alpha
PR:000029032 Mus musculus protein
  Gene TemplateMGI:97856 Rara (mouse)
  TaxonNCBITaxon:10090 Mus musculus
  Terms by PRO Category
Organism-Independent Organism-Specific
         Category          Number of Terms          Category          Number of Terms
         Gene0                                                  Organism-Gene 1                                        
         Sequence0                                                  Organism-Sequence 2                                        
         Modification0                                                  Organism-Modification 1                                        
  Term Hierarchy
  Visualization
DAG: OLS:
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Related Cross References

  Db identifiers
UniProtKB:P11416
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Protein Forms  Switch to Extended View   

Category  
PRO Form Name
Short Name
Ann. Has Annotation?

Comp. In Complex?
organism-gene


PR:P11416 retinoic acid receptor alpha (mouse)
mRARA
Yes
organism-sequence


PR:P11416-1 retinoic acid receptor alpha isoform 1 (mouse)
mRARA/iso:1
Yes
organism-modification


PR:000026077 retinoic acid receptor alpha isoform 1 phosphorylated 1 (mouse)
mRARA/iso:1/Phos:1

organism-sequence


PR:P11416-2 retinoic acid receptor alpha isoform Alpha-2 (mouse)
mRARA/iso:Alpha-2

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Functional Annotation (GO-centric view) Switch to PRO Centric View     

Biological Process GO Term
Protein Forms & Complexes
Evidence
GO:0000122 negative regulation of transcription by RNA polymerase IIPR:P11416 mRARA PMID:7566114
PR:P11416-1 mRARA/iso:1 PMID:8152920
GO:0001657 ureteric bud developmentPR:P11416 mRARA PMID:12195422
GO:0006355 regulation of DNA-templated transcriptionPR:P11416-1 mRARA/iso:1 PMID:12101409
PR:P11416-1 mRARA/iso:1 PMID:12101409
PR:P11416-1 mRARA/iso:1 PMID:12101409
PR:P11416-1 mRARA/iso:1 PMID:12101409
PR:P11416-1 mRARA/iso:1 PMID:12101409
PR:P11416-1 mRARA/iso:1 PMID:12101409
GO:0007283 spermatogenesisPR:P11416 mRARA MGI_ref:61760; PMID:8394014
GO:0008284 positive regulation of cell population proliferationPR:P11416 mRARA PMID:18026104
GO:0010629 negative regulation of gene expressionPR:P11416 mRARA PMID:18026104
GO:0030852 regulation of granulocyte differentiationPR:P11416 mRARA PMID:11222375
GO:0032526 response to retinoic acidPR:P11416 mRARA PMID:11222375
GO:0045892 negative regulation of DNA-templated transcriptionPR:P11416-1 mRARA/iso:1 PMID:11641275
GO:0045944 positive regulation of transcription by RNA polymerase IIPR:P11416 mRARA PMID:7823919
PR:P11416 mRARA PMID:7823919
PR:P11416 mRARA PMID:7823919
PR:P11416 mRARA PMID:7823919
PR:P11416 mRARA PMID:7823919
PR:P11416 mRARA PMID:7823919
PR:P11416 mRARA PMID:7823919
PR:P11416 mRARA PMID:7823919
GO:0045947 negative regulation of translational initiationPR:P11416-1 mRARA/iso:1 MGI_ref:3803427; PMID:18495661
GO:0055012 ventricular cardiac muscle cell differentiationPR:P11416 mRARA PMID:9428411

Molecular Function GO Term
Protein Forms & Complexes
Evidence
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA bindingPR:P11416-1 mRARA/iso:1 MGI_ref:3053708; PMID:1655807
GO:0003677 DNA bindingPR:P11416-1 mRARA/iso:1 PMID:15528198
PR:P11416-1 mRARA/iso:1 PMID:15528198
PR:P11416-1 mRARA/iso:1 PMID:15528198
PR:P11416-1 mRARA/iso:1 PMID:15528198
PR:P11416-1 mRARA/iso:1 PMID:15528198
PR:P11416-1 mRARA/iso:1 PMID:15528198
GO:0003700 DNA-binding transcription factor activityPR:P11416-1 mRARA/iso:1 PMID:8152920
PR:P11416-1 mRARA/iso:1 PMID:8152920
PR:P11416-1 mRARA/iso:1 PMID:8152920
PR:P11416-1 mRARA/iso:1 PMID:8152920
PR:P11416-1 mRARA/iso:1 PMID:8152920
PR:P11416-1 mRARA/iso:1 PMID:8152920
GO:0004879 nuclear receptor activityPR:P11416-1 mRARA/iso:1 PMID:15322135
PR:P11416-1 mRARA/iso:1 PMID:15322135
PR:P11416-1 mRARA/iso:1 PMID:15322135
PR:P11416-1 mRARA/iso:1 PMID:15322135
PR:P11416-1 mRARA/iso:1 PMID:15322135
PR:P11416-1 mRARA/iso:1 PMID:15322135
GO:0005515 protein bindingPR:P11416-1 mRARA/iso:1 PMID:10531331
PR:P11416-1 mRARA/iso:1 PMID:10531331
PR:P11416-1 mRARA/iso:1 PMID:10531331
PR:P11416-1 mRARA/iso:1 PMID:10531331
PR:P11416-1 mRARA/iso:1 PMID:10531331
PR:P11416-1 mRARA/iso:1 PMID:10531331
GO:0043565 sequence-specific DNA bindingPR:P11416 mRARA PMID:7823919
PR:P11416-1 mRARA/iso:1 PMID:17928865

Cellular Location GO Term
Protein Forms & Complexes
Evidence
GO:0005634 nucleusPR:P11416-1 mRARA/iso:1 PMID:12079996
GO:0005737 cytoplasmPR:P11416-1 mRARA/iso:1 PMID:12079996
GO:0030425 dendritePR:P11416-1 mRARA/iso:1 MGI_ref:3803427; PMID:18495661
GO:0043025 neuronal cell bodyPR:P11416-1 mRARA/iso:1 MGI_ref:3803427; PMID:18495661