Properties defined in PRO
| oboInOwl:hasAlternativeId | |
|---|---|
| rdf:type | owl:AnnotationProperty |
| rdfs:label | "has_alternative_id" |
| obo:BFO_0000050 a owl:TransitiveProperty , owl:ObjectProperty ; | |
|---|---|
| rdfs:label | "part_of" |
| oboInOwl:hasDbXref | "BFO:0000050" |
| oboInOwl:hasOBONamespace | "protein" |
| oboInOwl:id | "part_of" |
| oboInOwl:shorthand | "part_of" |
| obo:BFO_0000051 a owl:TransitiveProperty , owl:ObjectProperty ; | |
|---|---|
| rdfs:label | "has_part" |
| oboInOwl:hasDbXref | "BFO:0000051" |
| oboInOwl:hasOBONamespace | "protein" |
| oboInOwl:id | "has_part" |
| oboInOwl:shorthand | "has_part" |
| pr:PRO-common-name a owl:AnnotationProperty ; | |
|---|---|
| rdfs:label | "Label appended to organism-specific terms in place of scientific name" |
| rdfs:subPropertyOf | oboInOwl:SynonymTypeProperty |
| oboInOwl:hasScope | oboInOwl:hasExactSynonym |
| oboInOwl:id a owl:AnnotationProperty . |
|---|
| oboInOwl:hasRelatedSynonym | |
|---|---|
| rdf:type | owl:AnnotationProperty |
| rdfs:label | "has_related_synonym" |
| pr:PRO-proteoform-ftid | |
|---|---|
| rdf:type | owl:AnnotationProperty |
| rdfs:label | "Synonyms for proteoforms based on use of UniProtKb feature identifier (FTId) and positions and types of modifications or variations" |
| rdfs:subPropertyOf | oboInOwl:SynonymTypeProperty |
| oboInOwl:hasScope | oboInOwl:hasExactSynonym |
| oboInOwl:hasNarrowSynonym | |
|---|---|
| rdf:type | owl:AnnotationProperty |
| rdfs:label | "has_narrow_synonym" |
| oboInOwl:hasOBOFormatVersion | |
|---|---|
| rdf:type | owl:AnnotationProperty |
| rdfs:label | "has_obo_format_version" |
| oboInOwl:hasSynonymType | |
|---|---|
| rdf:type | owl:AnnotationProperty |
| rdfs:label | "has_synonym_type" |
| pr:has_gene_template a owl:ObjectProperty ; | |
|---|---|
| rdfs:label | "has_gene_template" |
| oboInOwl:hasOBONamespace | "protein" |
| oboInOwl:id | "has_gene_template" |
| oboInOwl:is_transitive | false |
| oboInOwl:hasDbXref a owl:AnnotationProperty ; | |
|---|---|
| rdfs:label | "database_cross_reference" |
| oboInOwl:SynonymTypeProperty | |
|---|---|
| rdf:type | owl:AnnotationProperty |
| rdfs:label | "synonym_type_property" |
| rdfs:comment a owl:AnnotationProperty . |
|---|
| oboInOwl:hasBroadSynonym | |
|---|---|
| rdf:type | owl:AnnotationProperty |
| rdfs:label | "has_broad_synonym" |
| pr:PRO-proteoform-std | |
|---|---|
| rdf:type | owl:AnnotationProperty |
| rdfs:label | "Synonyms for proteoforms based on use of UniProtKb accession, subsequence range, and positions and types of modifications or variations" |
| rdfs:subPropertyOf | oboInOwl:SynonymTypeProperty |
| oboInOwl:hasScope | oboInOwl:hasExactSynonym |
| obo:IAO_0000115 a owl:AnnotationProperty ; | |
|---|---|
| rdfs:label | "definition" |
| pr:PSI-MOD-label a owl:AnnotationProperty ; | |
|---|---|
| rdfs:label | "Unique short label curated by PSI-MOD" |
| rdfs:subPropertyOf | oboInOwl:SynonymTypeProperty |
| oboInOwl:hasScope | oboInOwl:hasExactSynonym |
| obo:RO_0002160 a owl:ObjectProperty ; | |
|---|---|
| rdfs:comment | "Down-propagates. The original name for this in the paper is 'specific_to'. Applicable to genes because some genes are lost in sub-species (strains) of a species." |
| rdfs:label | "only_in_taxon" |
| obo:IAO_0000115 | "U only_in_taxon T: U is a feature found in only in organisms of species of taxon T. The feature cannot be found in an organism of any species outside of (not subsumed by) that taxon. Down-propagates in U hierarchy, up-propagates in T hierarchy (species taxonomy). Implies applicable_to_taxon." |
| oboInOwl:hasDbXref | "RO:0002160" |
| oboInOwl:hasExactSynonym | "specific_to" |
| oboInOwl:hasExactSynonym | specific_to_taxon" |
| oboInOwl:hasExactSynonym | never_outside_taxon" |
| oboInOwl:hasOBONamespace | "protein" |
| oboInOwl:id | "only_in_taxon" |
| oboInOwl:is_transitive | false |
| oboInOwl:shorthand | "only_in_taxon" |
| obo:RO_0001000 a owl:TransitiveProperty , owl:ObjectProperty ; | |
|---|---|
| rdfs:label | "derives_from" |
| oboInOwl:hasDbXref | "RO:0001000" |
| oboInOwl:hasOBONamespace | "protein" |
| oboInOwl:id | "derives_from" |
| oboInOwl:shorthand | "derives_from" |
| oboInOwl:saved-by a owl:AnnotationProperty . |
|---|
| obo:RO_0002180 a owl:ObjectProperty ; | |
|---|---|
| rdfs:label | "has_component" |
| oboInOwl:hasDbXref | "RO:0002180" |
| oboInOwl:hasOBONamespace | "protein" |
| oboInOwl:id | "has_component" |
| oboInOwl:is_transitive | false |
| oboInOwl:shorthand | "has_component" |
| obo:IAO_0100001 a owl:AnnotationProperty ; | |
|---|---|
| rdfs:label | "term replaced by" |
| owl:deprecated a owl:AnnotationProperty . |
|---|
| obo:RO_0001025 a owl:TransitiveProperty , owl:ObjectProperty ; | |
|---|---|
| rdfs:label | "located_in" |
| oboInOwl:hasDbXref | "RO:0001025" |
| oboInOwl:hasOBONamespace | "protein" |
| oboInOwl:id | "located_in" |
| oboInOwl:shorthand | "located_in" |
| obo:RO_0000056 a owl:ObjectProperty ; | |
|---|---|
| rdfs:label | "participates_in" |
| oboInOwl:hasDbXref | "RO:0000056" |
| oboInOwl:hasOBONamespace | "protein" |
| oboInOwl:id | "participates_in" |
| oboInOwl:is_transitive | false |
| oboInOwl:shorthand | "participates_in" |
| pr:non-covalently_bound_to | |
|---|---|
| rdf:type | owl:SymmetricProperty |
| rdf:type | owl:ObjectProperty |
| rdfs:domain | obo:CHEBI_24431 |
| rdfs:label | "non-covalently_bound_to" |
| rdfs:range | obo:CHEBI_24431 |
| obo:IAO_0000115 | "A relation that holds between two distinct chemical entities that are held in close proximity to each other specifically via the force of non-covalent interactions. Such entities will, at all times of the interaction, colocalize with each other." |
| oboInOwl:hasOBONamespace | "protein" |
| oboInOwl:id | "non-covalently_bound_to" |
| oboInOwl:is_transitive | false |
| pr:lacks_part a owl:ObjectProperty ; | |
|---|---|
| rdfs:label | "lacks_part" |
| oboInOwl:hasOBONamespace | "protein" |
| oboInOwl:id | "lacks_part" |
| oboInOwl:is_transitive | false |
| obo:RO_0000086 a owl:ObjectProperty ; | |
|---|---|
| rdfs:label | "has_quality" |
| oboInOwl:hasDbXref | "RO:0000086" |
| oboInOwl:hasOBONamespace | "protein" |
| oboInOwl:id | "has_quality" |
| oboInOwl:is_transitive | false |
| oboInOwl:shorthand | "has_quality" |
| rdfs:label a owl:AnnotationProperty . |
|---|
| pr:PRO-short-label a owl:AnnotationProperty ; | |
|---|---|
| rdfs:label | "Unique short label for PRO terms for display purposes; based on orthology" |
| rdfs:subPropertyOf | oboInOwl:SynonymTypeProperty |
| oboInOwl:hasScope | oboInOwl:hasExactSynonym |
| oboInOwl:date a owl:AnnotationProperty . |
|---|
| oboInOwl:hasOBONamespace | |
|---|---|
| rdf:type | owl:AnnotationProperty |
| rdfs:label | "has_obo_namespace" |
| oboInOwl:hasExactSynonym | |
|---|---|
| rdf:type | owl:AnnotationProperty |
| rdfs:label | "has_exact_synonym" |
| oboInOwl:auto-generated-by | |
|---|---|
| rdf:type | owl:AnnotationProperty |
| oboInOwl:hasScope a owl:AnnotationProperty ; | |
|---|---|
| rdfs:label | "has_scope" |
| oboInOwl:default-namespace | |
|---|---|
| rdf:type | owl:AnnotationProperty |
| oboInOwl:consider a owl:AnnotationProperty ; | |
|---|---|
| rdfs:label | "consider" |
| pr:1to1_ortholog_of a owl:TransitiveProperty , owl:ObjectProperty ; | |
|---|---|
| rdfs:comment | "Definition is modeled after the definition in the Homology Ontology term HOM:0000020." |
| rdfs:label | "1to1_ortholog_of" |
| obo:IAO_0000115 | "If a and b are genes, a 1to1_ortholog_of b iff neither a nor b was duplicated after the speciation event that created them. If a and b are proteins, then a 1to1_ortholog_of b iff a has_gene_template some gene A and b has_gene_template some gene B and A 1to1_ortholog_of B." |
| oboInOwl:hasOBONamespace | "protein" |
| oboInOwl:id | "1to1_ortholog_of" |
| oboInOwl:is_transitive | |
|---|---|
| rdf:type | owl:AnnotationProperty |
