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Protein Ontology Kick-Off Meeting
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Created by Meher Shruti S Yerramalla, last modified by Darren Natale on Feb 26, 2021
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| The inaugural meeting of the Protein Ontology project will take place in Georgetown University (Harris Building, Monday 3: Conference Room 1300, Tuesday 4: Conference Room 4200), Washington DC on December 2-4, 2007. This is an internal meeting.
The goals of the meeting are:
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|  | to present the PRO ontology and to subject it to preliminary critique; |
| | to clarify the relations between PRO and its neighbor ontologies, between PRO and the representations in protein sequence databases, and between PRO and GO sequence annotations; |
| | to establish plans for PRO's further development, dissemination and use.. |
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Agenda
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Sunday, December 2
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| | Arrival of Workshop Participants |
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6:30pm Dinner for Workshop Participants (Red Ginger [1]; Meet in Hotel Lobby at 6:15pm)
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Monday, December 3
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Location: Conference Room 1300
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8:30am Continental Breakfast
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10:00am-10.30am Break
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10.30am-12:15pm Session 2: The Protein Ontology within the OBO Foundry (Barry Smith)
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6:30pm Dinner for Workshop Participants (Red Ginger [1]; Meet in Hotel Lobby at 6:15pm)
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| | presentation by Lindsay Cowell on OBO Foundry Methodologies |
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12:15pm-1:30pm Lunch
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1:30pm-3:30pm Session 3: The Protein Ontology and Its Neighbors (Darren Natale)
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| | presentation by James W. Brown on the RNA Ontology |
| | presentation by Karen Eilbeck on the Sequence Ontology |
| | presentation by Richard H. Scheuermann on HLA Proteins |
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3.30pm-4:00pm Break
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4:00pm-5:00pm Session 4: PRO, GO and GO Annotations (Chris Mungall)
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| | presentation by Harold Drabkin on GO Annotation to Protein Isoforms |
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6:30pm Dinner (Heritage India [2]; Meet in Hotel Lobby at 6:15pm)
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Tuesday, December 4
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Location: Conference Room 4200
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8:30am Continental Breakfast
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9:00am-10:15am Session 5: Ontologies and Databases (Alan Ruttenberg)
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| | presentation by John Westbrook on the Representation of Protein Structure and Experiment in the Protein Data Bank (PDB) |
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10:15am-10.30am Break
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10:30am-12:30pm Session 6: The Protein Ontology and Its Users (Judith Blake)
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| | presentation by Bill Bug on PRO and SO in Neuropathology and Neuropharmacology |
| | presentation by Gopal Gopinathrao on Reactome and the Future of PRO |
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12:30pm-1:30pm Lunch
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1:30pm-4:00pm Session 7: Next Steps (Suzanna Lewis)
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Documents (pre-workshop)
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Documents (new)
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Issues to address [3]
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PRO diagram revision [4]
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Presentations
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Blake [5]
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Brown [6]
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Bug [7]
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Cowell [8]
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Drabkin [9]
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Eilbeck [10]
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Gopinayhrao [11]
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Lewis [12]
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Mungall [13]
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Natale [14]
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Ruttenberg [15]
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Scheuermann [16]
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Smith [17]
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Westbrook [18]
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Wu [19]
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Participants
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